YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Mct1-PA, FBpp0309617
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.97
Transmembrane Helix	32	53	0.90
Non-Cytoplasmic	54	71	0.91
Transmembrane Helix	72	91	0.94
Cytoplasmic	92	101	0.67
Transmembrane Helix	102	121	0.94
Non-Cytoplasmic	122	126	0.79
Transmembrane Helix	127	148	0.92
Cytoplasmic	149	159	0.79
Transmembrane Helix	160	180	0.94
Non-Cytoplasmic	181	188	0.77
Transmembrane Helix	189	210	0.91
Cytoplasmic	211	426	0.99
Transmembrane Helix	427	449	0.88
Non-Cytoplasmic	450	462	0.90
Transmembrane Helix	463	482	0.92
Cytoplasmic	483	492	0.82
Transmembrane Helix	493	512	0.95
Non-Cytoplasmic	513	518	0.80
Transmembrane Helix	519	542	0.91
Cytoplasmic	543	552	0.77
Transmembrane Helix	553	573	0.92
Non-Cytoplasmic	574	582	0.82
Transmembrane Helix	583	606	0.89
Cytoplasmic	607	626	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHGPPARRK SQQQHEACEM DMERQPTPPD GGWGWVVVFG SFMIHIVTDG MTYSFGIFYN  60
   61 EFLDYFNEGK GYTAWIASIM VGVTFSSGPI SSSFVNRYGC RAVTIAGSIL AASCIIVSMF 120
  121 AQNVLTLIIT IGFGTGLGFG LIYLPAIVSV TQYFEAKRSL ATGIAVCGSG FGTFVFAPLT 180
  181 EFLIGNYGWR GAMLIIGGIV LNCIIFGAMF RPLELEAPPQ TPPNTPSTPK LAKKSAIIDQ 240
  241 NTTAAELEPL KVLPKDQYLQ LPQRTDTAVS GGALCRSNSV GHNLKPNLNN NSNGAVNGQG 300
  301 PTLVTPPQAV VKSTSNDDIA RKCHSQLQLT PLRDAHRERS ASGTMYRPDA LYQGSLHNLP 360
  361 DYVSSRNDLS RSMSGSGVIK RYGSLRQSNN VSQSQEEAKC CGCITCSKET RDTFAEMMNF 420
  421 SLLKDMVFVI FSVSNFCTSI GFNVPYLYVV AYAETLKLTK TDASYLISTI GVANTVGRII 480
  481 LGYISDKPWV NRLLVYNVCL TACGVSTAMV PLCHDFQSLA FYCCVFGFTI GAYVGLTSVI 540
  541 LVDLLGLDKL TNAFGLLLLF QGIASFIGPP IGGWMYDLTD SYAPAFLMAG LMIAISGLVM 600
  601 FAIPPLQRLQ VRKSERKPHT EHLALS