YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4313-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVYGCGEFS FSTNSAQERA TRLLPNTKCR AMFPPKSGPT PHPISIALPL SDPYATDHMA  60
   61 DQDAVLPVPL SDSLDLDVDV DLNLNMNLNL NVDDRRQVLF EGYSDELLTI AWVACIVFII 120
  121 VGVPGNLLTI VALSRGRQTR NSTAIFIINL SCSDLLFGCF NLPLAASTFK ERAWTHSDLL 180
  181 CRLFPMLRYG LLAVSLLSVS LITINRYIII AHPRQYPRIY QRRYLALMVA GTWITTFSIM 240
  241 IPTWRGVWGI FGLDVSIGSC SIMHDRYGRS PKEFLFIAAF MVPCICIVIC YARIFLLVRK 300
  301 AAIRAGTAGK TNVSDVTPSS APQHQIQAMA TPKKPEKVTT SSGEANEPIA GRPFVVEENL 360
  361 AYIDDNASTD SLPISYSIRR RDQDQQPPPV DANVVLKERE KERDRDQEKV SLGRSQTQLE 420
  421 MGKTHGKNPI TTSLRTTSFT RFSPRKSHYA SMGNTSNASS IYPGRMSAKD RRLLKMILVI 480
  481 FVWFVICYLP ITVAKIWKSA TEVHWFNIAG YLLIYLTTCI NPLIYVLMSS EYRRAYWNLL 540
  541 RCHGSPDTQK QRNQANAKRK HLESNRQVKA TT

Type	Start	End	Confidence
Non-Cytoplasmic	1	107	0.95
Transmembrane Helix	108	131	0.92
Cytoplasmic	132	144	0.82
Transmembrane Helix	145	166	0.92
Non-Cytoplasmic	167	186	0.91
Transmembrane Helix	187	209	0.89
Cytoplasmic	210	223	0.92
Transmembrane Helix	224	244	0.93
Non-Cytoplasmic	245	273	0.94
Transmembrane Helix	274	297	0.91
Cytoplasmic	298	472	0.99
Transmembrane Helix	473	494	0.91
Non-Cytoplasmic	495	507	0.76
Transmembrane Helix	508	527	0.95
Cytoplasmic	528	572	0.98