YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Scgdelta-PA, FBp...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAGSSEIT DFGPHSRQLT AGNTPKRPNK ASSHRPGSGS GPGPMTTGGT SSASGNGNSG  60
   61 GALNAIPTTK VGSGGGGGGA MSATTVTATT GKATVSHGHS HGHALGRSET RSGRSAAAGR 120
  121 SNVDGFVGGI ETYLGLIGWR KKCLYTLLLL LMLLIITNLV LTLWILKVME FSTEGMGQLK 180
  181 IVPGGIQLSG QAIIMDMLRA STIRSRHGQP ISIESSRNFS INTRDPNGMI ENHLFLGHDK 240
  241 FECLSAGFRI NDTNGRSLFS VNRDEVTIGA HALRIDGEGG AVFRESVQTP HVRAEPGREL 300
  301 RLESPTRQLE MTAAKDINLQ SRAGGIEVVA LEDVKFRALD GSLRLESSKI LMPNLRTAQP 360
  361 PILGTAQSRD HMHRVFQLCA CSNGKLFLAA PHSICAGDDS TVCR

Type	Start	End	Confidence
Cytoplasmic	1	143	0.95
Transmembrane Helix	144	166	0.93
Non-Cytoplasmic	167	180	0.83
Transmembrane Helix	181	198	0.51
Cytoplasmic	199	404	0.55