YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pck-PC, pck-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRELNKQQSQ DTTDSGVEKG DYPRATNGVV FGAIVTFASF FVLMMSFCSP YWIESYEETR  60
   61 ASFKNMGLWQ YCFKDFVYPK YAFLKQFTGC HNIFSHEYYV IREYLLPGWL MAVQGFVTMS 120
  121 FIIVFLVLAL LSLTIIRLPL KAVLQYEWLL VRLSYMGTAI SSLFMFLAVC IFGGCAYRRD 180
  181 WMMYPKFNVL GWSYALAVVT FMLLGLAALI LQREARQAYD ARGEQKNLVM QMEMQEPGYQ 240
  241 PPRHHHSQSR SLQGYI

Type	Start	End	Confidence
Cytoplasmic	1	27	0.90
Transmembrane Helix	28	48	0.90
Non-Cytoplasmic	49	114	0.89
Transmembrane Helix	115	136	0.92
Cytoplasmic	137	152	0.82
Transmembrane Helix	153	176	0.88
Non-Cytoplasmic	177	189	0.88
Transmembrane Helix	190	211	0.93
Cytoplasmic	212	256	0.94