YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG13359-PA
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCSASFNAL CDVGTPRPNL QRLIPYVEPQ QDDEEDMVVW CRSNLDLACS LSEMRIRCPE  60
   61 HFDVATVVGV NSHTGKLITH FNHRKLGDVD LAPHALLSRR DKFMDICQKQ VMTSQGCLAS 120
  121 EGTPIPADLE VTWQSHSIID CLALRKVRAE MNLADQKAAK NLVDRVEVHH KTLQTEEAER 180
  181 RKLIIDKANS ARNLTIDKAN SARILAIDKA TSARKLTIDN STSAGTLTID KATNARKLTI 240
  241 DKGTSARKLT IDKATSARKL TIDKATSARK MTIDKAKSTR NLTIDNATSA RKLTIEKATS 300
  301 ARKMTIDKAK STRNLTIDNA TSARKLTIEK ATSARRFSRP KRYVSGYISK RKSIGKTESL 360
  361 SRGAYIPDPE LNRAIAKYGV SASQPFKRQH CLVLEKHPDR TQIPNSRTNT SGCKSDGSST 420
  421 PIWRSARTGA DQNTQAESSD SFNSSNSFES SSLASDSQEN HELSTAAGLT AAFMRRHMLF 480
  481 HLLARRFRRR YLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	462	0.99
Transmembrane Helix	463	479	0.61
Cytoplasmic	480	493	0.55