YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or1a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLIEVFLG NLWTQRFTFA RMGLDLQPDK KGNVLRSPLL YCIMCLTTSF ELCTVCAFMV  60
   61 QNRNQIVLCS EALMHGLQMV SSLLKMAIFL AKSHDLVDLI QQIQSPFTEE DLVGTEWRSQ 120
  121 NQRGQLMAAI YFMMCAGTSV SFLLMPVALT MLKYHSTGEF APVSSFRVLL PYDVTQPHVY 180
  181 AMDCCLMVFV LSFFCCSTTG VDTLYGWCAL GVSLQYRRLG QQLKRIPSCF NPSRSDFGLS 240
  241 GIFVEHARLL KIVQHFNYSF MEIAFVEVVI ICGLYCSVIC QYIMPHTNQN FAFLGFFSLV 300
  301 VTTQLCIYLF GAEQVRLEAE RFSRLLYEVI PWQNLPPKHR KLFLFPIERA QRETVLGAYF 360
  361 FELGRPLLVW IFRTAGSFTT LMNALYAKYE TH

Type	Start	End	Confidence
Cytoplasmic	1	126	0.76
Transmembrane Helix	127	150	0.90
Non-Cytoplasmic	151	184	0.83
Transmembrane Helix	185	208	0.79
Cytoplasmic	209	262	0.86
Transmembrane Helix	263	284	0.89
Non-Cytoplasmic	285	290	0.82
Transmembrane Helix	291	312	0.93
Cytoplasmic	313	368	0.87
Transmembrane Helix	369	387	0.50
Non-Cytoplasmic	388	392	0.51