YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG32000-PF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPHNDSKDS KPCIGLLNPD QEDQMKVCGY RRSLMRTGFC WACIFLTGGL LRLVLHWWRH  60
   61 LYLYATCSQC SLEEAEQVLV TEDYQGKHKM YHVKQIQVLT SSNLKTLLEK EQQSIERTHI 120
  121 ECDHVENVLQ LSVHFTSAQF KKCSSIRIFR CKQLVYAWNN NTNRFQRING LDLNIPCSYY 180
  181 HQQRGLPVHE QISRRIVFGD NEITVPLRDF KTLLFLEVLN PFYVFQLFSV ILWFTYDYYY 240
  241 YACVILLMSV FGITVSVLQT KKNQDVLQKT VYNTGNAWVV DHKGLSKELP TRAIVPGDII 300
  301 EIPSSGCTLH CDAILISGNC ILDESMLTGE SVPVTKTPLP SKRDMIFDKT EHARHTLFCG 360
  361 TKVIQTRYIG SKKVLAFVIN TGNITAKGEL IRSILYPPPV DYKFEQDSYK FIQFLAIIAC 420
  421 VGFIYTLVTK ILRGTDPVKI AVESLDLITI VVPPALPAAM TVGRFYAQKR LKTSEIFCIS 480
  481 PRSINVAGSI NCCCFDKILK YSILRERRER AILAVTKKVS A

Type	Start	End	Confidence
Cytoplasmic	1	33	0.62
Transmembrane Helix	34	56	0.79
Non-Cytoplasmic	57	237	0.54
Transmembrane Helix	238	258	0.90
Cytoplasmic	259	410	0.91
Transmembrane Helix	411	432	0.84
Non-Cytoplasmic	433	446	0.72
Transmembrane Helix	447	467	0.76
Cytoplasmic	468	521	0.86