YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG32000-PE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYVATESVQ PKKSDKVPSN KIKKVENNNT LVNGCSKTSA RSVPLLKYNR PDQDGDSEEN  60
   61 ITSVLEPNVD EIYSKDSERL VDDSKPCIGL LNPDQEDQMK VCGYRRSLMR TGFCWACIFL 120
  121 TGGLLRLVLH WWRHLYLYAT CSQCSLEEAE QVLVTEDYQG KHKMYHVKQI QVLTSSNLKT 180
  181 LLEKEQQSIE RTHIECDHVE NVLQLSVHFT SAQFKKCSSI RIFRCKQLVY AWNNNTNRFQ 240
  241 RINGLDLNIP CSYYHQQRGL PVHEQISRRI VFGDNEITVP LRDFKTLLFL EVLNPFYVFQ 300
  301 LFSVILWFTY DYYYYACVIL LMSVFGITVS VLQTKKNQDV LQKTVYNTGN AWVVDHKGLS 360
  361 KELPTRAIVP GDIIEIPSSG CTLHCDAILI SGNCILDESM LTGESVPVTK TPLPSKRDMI 420
  421 FDKTEHARHT LFCGTKVIQT RYIGSKKVLA FVINTGNITA KGELIRSILY PPPVDYKFEQ 480
  481 DSYKFIQFLA IIACVGFIYT LVTKILRGTD PVKIAVESLD LITIVVPPAL PAAMTVGRFY 540
  541 AQKRLKTSEI FCISPRSINV AGSINCCCFD KILKYSILRE RRERAILAVT KKVSA

Type	Start	End	Confidence
Cytoplasmic	1	110	0.74
Transmembrane Helix	111	130	0.81
Non-Cytoplasmic	131	311	0.67
Transmembrane Helix	312	332	0.89
Cytoplasmic	333	484	0.90
Transmembrane Helix	485	506	0.83
Non-Cytoplasmic	507	520	0.71
Transmembrane Helix	521	541	0.75
Cytoplasmic	542	595	0.85