YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Smvt-PA
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.80
Transmembrane Helix	29	49	0.94
Cytoplasmic	50	68	0.92
Transmembrane Helix	69	90	0.92
Non-Cytoplasmic	91	98	0.76
Transmembrane Helix	99	122	0.87
Cytoplasmic	123	142	0.95
Transmembrane Helix	143	166	0.89
Non-Cytoplasmic	167	175	0.71
Transmembrane Helix	176	194	0.94
Cytoplasmic	195	203	0.69
Transmembrane Helix	204	225	0.88
Non-Cytoplasmic	226	253	0.94
Transmembrane Helix	254	273	0.91
Cytoplasmic	274	292	0.88
Transmembrane Helix	293	315	0.94
Non-Cytoplasmic	316	351	0.93
Transmembrane Helix	352	379	0.82
Cytoplasmic	380	394	0.93
Transmembrane Helix	395	415	0.95
Non-Cytoplasmic	416	423	0.79
Transmembrane Helix	424	445	0.94
Cytoplasmic	446	452	0.87
Transmembrane Helix	453	474	0.93
Non-Cytoplasmic	475	528	0.97
Transmembrane Helix	529	549	0.91
Cytoplasmic	550	591	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLLNATVL ATAATVVPDS QFVFNATDYG VFALVLSISA AIGVYFGFFA KGEDTTEEYL  60
   61 MGGKRMKTIP IAISLVASQL SAISIMTIPA EMYAYGINWV FNVVCMVLVV PLLNYLVIPV 120
  121 FYNNNITNCY EYLEMRFCRK VRVLQTFIFI LTMFFMLPIF IFLPSLAFAQ VTGFNVHLIN 180
  181 TVVCSICVFY TMFGGIKAVV WTDVIQAAIM VASVVLVGVL GAHRVGGFFE VLRIAGEGGR 240
  241 LDINYNFDLT TRSTIWNIFT SATMMWTGYV GLNQSCVQRI VSLPSLGHAR RSLVLFGFGF 300
  301 ILIMFFNCFT GIVIYSRFHD CDPIQSGHVS KVDKMVPYFV QDTVGNLWGM PGVFISCVFS 360
  361 AALSTLSASI NSLGGVVYFD YIKPHIRHTE HRANVIMKLF VFFTGIYCIL GGMVIENFNS 420
  421 ILQVIYSIGG MSFGSTCGVF MLGMLVPKSH GRAALVGVLA SIACMATIVI LSWGRNHYDT 480
  481 LPTSTSACPA SLNGTIKDIS TASPLFLGST TEAPVGEKEF SILDLSFNWY TVTGFVITWL 540
  541 IGIPLSYILK SGPDYKPNPK LLSPVVQPFV HYKLTPSDEP HQLNLEKPEK V