YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG31002-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPIFLLVCL LPGYSEGARI LAVFPLPSSS HYFFALPYLK SLASLGHEIT SVSPYPQREP  60
   61 FRNIHDIPVP EVFENFNEVL RIASTPRSTW QSSDFINEYV LNLTKTVLNN EGVRRDILGP 120
  121 QKPHFDLVIM DLWRMDVLSG LAAYFDAPII GMASYGTDWK IDELMGNVSP ISYLQSPSSR 180
  181 FYDLEAYGER LLHLMERTFS YMNYKWRHVR KQETLYSQFF PSVAERKPLS EISRNFDLVL 240
  241 VNQHFTLGPP RPYVPNMIQV GGLHVDHSTE ALSAELDHFI QGAGESGVIY FSLGTNVKSK 300
  301 SLSEDRRKVL LETFASLPQR IVWKFEDELL PGKPPNVFIS KWFPQQAILA HPNVKLFITH 360
  361 GGLLSTIESI HHGKPMLGLP CLFDQFRNMD HVRQVGLGLV LNIKQMTSEE FRSTIIRLLT 420
  421 NKSFEETARI TAARYRDQPM KPMETAIWWT EYVLSHKGAA HMQVAGKDLG FVRYHSLDVF 480
  481 GTFLVGALVI LGIVTYLLVM TLRKCLFLIK RGKCEAIKKI Q

Type	Start	End	Confidence
Signal Peptide	1	17	0.98
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	478	0.99
Transmembrane Helix	479	502	0.90
Cytoplasmic	503	521	0.96