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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: chp-PA
Protein type: Transmembrane
Type Confidence: 0.75
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEFFFKFG YAFLTITLMI MIWMSLARAS MFDREMEETH YPPCTYNVMC TCSKSSTDLG  60
   61 IVHCKNVPFP ALPRMVNQSK VFMLHMENTG LREIEPYFLQ STGMYRLKIS GNHLTEIPDD 120
  121 AFTGLERSLW ELILPQNDLV EIPSKSLRHL QKLRHLDLGY NHITHIQHDS FRGLEDSLQT 180
  181 LILRENCISQ LMSHSFSGLL ILETLDLSGN NLFEIDPNVF VDGMPRLTRL LLTDNILSEI 240
  241 PYDALGPLKS LRTLDISHNV IWSLSGNETY EIKASTKLNL DNLHLEYNHI EVLPPNSFKY 300
  301 FDTVNRTFFD GNPIHTLRED AFKPARIREI YMRYCGLTNI SPVAFDSLVN SLQILDLSGN 360
  361 NLTKLHHKLF NNFDVLRVIS MRDNKIKIQK PTETFNAVHY TLLKLDLSGD RNDPTNLQTL 420
  421 RNMTRMRNMR SLSISRLGSS SVGPEDFKDF GVELEDLQIT RASLSGIQSH AFKHVRGLKR 480
  481 LDFSENGISS IENDAFHEIG HSLISLKMSH GYSGSALPAE PLRHLTSLQE LDFSNNHISS 540
  541 MSDTSFHFLK NLRLLELHDN RIEQVLKGTF QGDIHSKLEE ISLRFNHLTS ISQHTFFDLE 600
  601 ALRKLHLDDN KIDKIERRAF MNLDELEYLS LRGNKINNLA DESFQNLPKL EILDMAFNQL 660
  661 PNFNFDYFDQ VGTLSNLNVN VSHNQIRQLM YNSSWSGRNE HGGMYHSNIK ILDLSHNNIS 720
  721 IIHPGYFRPA EISLTHLHLG YNSLMNTTRD VFGNMPHLQW LDLSYNWIHE LDFDAFKNTK 780
  781 QLQLVFFGHN YLSDIPQDIF KPVQGLRIVD FSHNHLRGLP DNLFYNGGME KLDVSHNMML 840
  841 KIPSSSLSSL AALTLCELHL SNNFISTIHS MDLSNKFRSL RYLDISYNYL LRIDDAVFAT 900
  901 MPKLAVLDLS HNRDLKVMDK SFMGLENSLI KLGLENISLS TVPEIRLKYL REFRLGYNEL 960
  961 PSIPQELAHN MSNLRMLDLS NNDLTNVPLM TQALPHLRRL MLSGNPITSL NNNSFDGVNE1020
 1021 DLEMLDISNF RLHYFEYGCL DSLPHLRSLK LTAYSHLEHF NIPHLLRHHY NIRQLWIEAP1080
 1081 QPFTRIVKKG SGPTQEMQTL QLGNPTDLQR EMEGHLPSKL TNITFSGPQF TNLNERILRG1140
 1141 MRSPYLYMQL FNTSLQALPP NFFKYMGRVR NISLDIRYHN RNLKKIPNPN TGAVPYLPNS1200
 1201 VFLTDLKMSH TDLNCDCDLG WVEFWQRKRR QYICSSQTWT DTVFRTFMNS PCQVYGRHNC1260
 1261 DEHDDDLRET RCENKGGQQL MEALKFDLEC GWDNANCREA AFVVVMVCVA MVFWM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle