YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ctr1C-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHHGVDASE GHVHHHASHG SPEPVPPSSG HEGHHSPEMN HHGNHGEHTK HGHHEGGAHD  60
   61 MSMAMFFHTG DSETILFKFW RTESAMALTL SCLLIFMVAV LYEALKFFRE WLFSWDRKRL 120
  121 AGGRDQYNRP RRYREANYNY NQPTYPPRTN QQSGTQHTHH HVQENTPPAG RTTKLKVFCS 180
  181 GMHILQTFLH VLQVLISFLL MLVFMTFNVW LCVAVLLGAG VGYYIFCAFR TNVQEHCN

Type	Start	End	Confidence
Cytoplasmic	1	84	0.54
Transmembrane Helix	85	105	0.93
Non-Cytoplasmic	106	191	0.47
Transmembrane Helix	192	226	0.79
Cytoplasmic	227	238	0.67