YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ctr1C-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHHGVDASE GHVHHHASHG SPEPVPPSSG HEGHHSPEMN HHGNHGEHTK HGHHEGGAHD  60
   61 MSMAMFFHTG DSETILFKFW RTESAMALTL SCLLIFMVAV LYEALKFFRE WLFSWDRKRL 120
  121 AGGRDQYNRP RRYREANYNY NQPTYPPRTN QQSGTQVYAY RPRSPSMPPL QPPGRSSPQA 180
  181 QSSLILTQHT HHHVQENTPP AGRTTKLKVF CSGMHILQTF LHVLQVLISF LLMLVFMTFN 240
  241 VWLCVAVLLG AGVGYYIFCA FRTNVQEHCN

Type	Start	End	Confidence
Non-Cytoplasmic	1	84	0.60
Transmembrane Helix	85	105	0.92
Cytoplasmic	106	212	0.68
Transmembrane Helix	213	236	0.68
Non-Cytoplasmic	237	238	0.44
Transmembrane Helix	239	259	0.85
Cytoplasmic	260	270	0.71