YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9717-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.96
Transmembrane Helix	86	108	0.88
Non-Cytoplasmic	109	115	0.71
Transmembrane Helix	116	134	0.91
Cytoplasmic	135	148	0.66
Transmembrane Helix	149	172	0.77
Non-Cytoplasmic	173	182	0.62
Transmembrane Helix	183	205	0.89
Cytoplasmic	206	211	0.79
Transmembrane Helix	212	230	0.75
Non-Cytoplasmic	231	240	0.64
Transmembrane Helix	241	259	0.93
Cytoplasmic	260	277	0.80
Transmembrane Helix	278	300	0.85
Non-Cytoplasmic	301	350	0.88
Transmembrane Helix	351	373	0.80
Cytoplasmic	374	425	0.86
Transmembrane Helix	426	445	0.87
Non-Cytoplasmic	446	451	0.62
Transmembrane Helix	452	471	0.92
Cytoplasmic	472	485	0.79
Transmembrane Helix	486	512	0.86
Non-Cytoplasmic	513	638	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQRADSGHT NSGFNGGSEV SLDIPTNTLY HTSRDCIVQE EQGPDESCLE GTQSCCSNLW  60
   61 SNIFRKKTLY KRFPILVWLP QYKKDYIFGD IVAGISVALT VIPQALAYAG IAGLDLQYGL 120
  121 YACFLGCFIY IFIGSSKDVP IGPTAISALL SFQIAGGSWQ IATLLTFLTG LIEILMGVFR 180
  181 LGFLIDFVSG PVGAGFTSAV SLIIFSSQMK DFLGIKTSGN TFLQVWISIV NDIHNISWPD 240
  241 FILGIVCITL LLSLRALASC TLGPKEGKTT AQKLLTGIFW TIGTARNALL VCGTAGLGYW 300
  301 LFVNGKENLV KTVGFVPKGL PSFQPPPFHM DAVVNETTGE VLQEAQSFWD MVSTLGSGLI 360
  361 VVPLIALLET MAVVQAFADG KPTDATQELI ASGVCNVANS FVQGLRSNGG IARGAILNAS 420
  421 GVRTQLSNLY TSVIVIIALL YLTPCFYYIP KAALASIIIA AVIFMVQYRV IKPMWHSKKT 480
  481 DLIPGLGAFF ACLVLPLQLG ILVGIGINVV FILYQAARPK LRIETLATTT GLKYLMLTPD 540
  541 RCLIFPSMEF VRKVINKQGQ KSTLPVVIDC THIYGADFTA AKVISTMVMD FKLREQPLFF 600
  601 YNLQPRVAQV FEGLNKDLVV IYDINTLHAK LAEKSPPI