YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9743-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLSSPIPGQ KQATSVGHCN GSCSLDRNGN RSAAIVPNGG ELKHRGHATD ATSHTLVKDD  60
   61 DNLGYKEENA VYKEQQLLQQ QDQTLKEAEQ VEEEEEYHPQ IRWPDLGAQA FLHIGALYGL 120
  121 YQLFYANFYT FLWVVVTVWV SGIGITAGAH RLWSHKSYTA SLPLRILLAF AFSIAGQRDA 180
  181 YTWALDHRIH HKFSETDADP HNAKRGFFFA HVGWLFLTPH PKVVAKRKVI DMSDLEADAV 240
  241 CMFQRKYYIP LFALCSIILP VAVPWYFWNE DLWMSFWINF NMRFTWTLNV AFFVNSVAHM 300
  301 YGNKPYDKNL MSTEAPIVSL LAMGEGWHNY HHVFPWDYKT GEFGNYSLNI TTGFIDFCAW 360
  361 LGLAKGRKSV SPDMVLRRAK KCGDGTRFLD DDHAHKDPVW GFGDKDIPRE DIVELAKMQN 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	105	0.92
Transmembrane Helix	106	125	0.74
Non-Cytoplasmic	126	130	0.63
Transmembrane Helix	131	153	0.86
Cytoplasmic	154	161	0.71
Transmembrane Helix	162	181	0.64
Non-Cytoplasmic	182	206	0.56
Transmembrane Helix	207	224	0.53
Cytoplasmic	225	246	0.91
Transmembrane Helix	247	268	0.93
Non-Cytoplasmic	269	283	0.82
Transmembrane Helix	284	302	0.88
Cytoplasmic	303	309	0.82
Transmembrane Helix	310	328	0.57
Non-Cytoplasmic	329	345	0.58
Transmembrane Helix	346	364	0.65
Cytoplasmic	365	420	0.94