YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0311990, CG9...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHLSTSERV CSKTPAIATD SSPPLVARRS KFPNGDAQQQ VRRGEDSSPE LPPRGKLQLP  60
   61 PKREELPRSV VPKEIANHVP KDAIDLEEYT RTFVGDRVLG WQFQAPLKWD KVIQISLLHI 120
  121 VAGICLLTYP LRELNPYTTI WSFFVGGVAG FGVTAGAHRF WTHKSYKANT VLRSILMVCY 180
  181 CVAGQNTLYD WVRDHRVHHK YSETDADPHN ANRGFFFSHV GWLMMLKHPE VLRRGRQIDM 240
  241 SDILADPVVR FHQKYFIPLK TFFCFILPTV IPVYCWGETW TLAFIQQCLF RYVSSLNFTW 300
  301 SVNSAAHLWG SRPYDKRIMP SENIYVSLLA MGEGWHNYHH VFPWDYKAAE LGNYTVNFTT 360
  361 MVLDAFHKLG WAWNMKQPSK ELVRRTLEKY GDGTHASQLG GPEEFKDGVL AGATMVGHVH 420
  421 YAEVPDPELE YDAESSSTES AKLDENENEG ERMKKSKKAA N

Type	Start	End	Confidence
Cytoplasmic	1	111	0.97
Transmembrane Helix	112	131	0.92
Non-Cytoplasmic	132	138	0.82
Transmembrane Helix	139	161	0.91
Cytoplasmic	162	258	0.67
Transmembrane Helix	259	277	0.83
Non-Cytoplasmic	278	291	0.60
Transmembrane Helix	292	310	0.44
Cytoplasmic	311	461	0.52