YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7943-PA, CG7943-PB
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.23
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDDGAPNVA KTTDPPPPKR FPSGRAHSPH GDGEAGKLLH GSVFSKRFFG SFQWEEFACG  60
   61 CGAAFVNIAV TYPIYKMIFR QMLHGVPITS AFAQLRHEGL GFLYRGMLPP LAQKTISLSI 120
  121 MFGVFDGTRR YLVEDYRLND YGAKVLAAVV AGSAESILLP FERVQTLLAD SKFHQHFSNT 180
  181 QNAFRYVVSH HGYRELYRGL EPVFWRNGLS NALFFVLREE ASVRLPKRKS VSTRTVQEFI 240
  241 AGAVIGASIS TIFYPLNVIK VSLQSEMGQR SEGSWQACKR IYVERDRRIG NFYRGCPFNT 300
  301 GRSFISWGIM NTAYENLKKL MQQQPPLPLA SE

Type	Start	End	Confidence
Cytoplasmic	1	56	0.49
Transmembrane Helix	57	75	0.51
Non-Cytoplasmic	76	110	0.61
Transmembrane Helix	111	125	0.23
Cytoplasmic	126	235	0.50
Transmembrane Helix	236	256	0.61
Non-Cytoplasmic	257	332	0.73