YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DopR2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.75
Transmembrane Helix	65	88	0.61
Non-Cytoplasmic	89	109	0.92
Transmembrane Helix	110	134	0.90
Cytoplasmic	135	144	0.87
Transmembrane Helix	145	167	0.93
Non-Cytoplasmic	168	187	0.90
Transmembrane Helix	188	209	0.88
Cytoplasmic	210	225	0.92
Transmembrane Helix	226	248	0.91
Non-Cytoplasmic	249	268	0.91
Transmembrane Helix	269	293	0.83
Cytoplasmic	294	419	0.98
Transmembrane Helix	420	438	0.93
Non-Cytoplasmic	439	456	0.77
Transmembrane Helix	457	477	0.93
Cytoplasmic	478	508	0.94
Transmembrane Helix	509	529	0.66
Non-Cytoplasmic	530	537	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDDNGSSPE VEGAEGAGAP LLALLRVDGL NQTQTRSPSP SFFGSYNISE DVYFYFNGLP  60
   61 TSTELVLNAT TSATSATLSP AMVATGGGGT TTPEPDLSEF LEALPNDRVG LLAFLFLFSF 120
  121 ATVFGNSLVI LAVIRERYLH TATNYFITSL AVADCLVGLV VMPFSALYEV LENTWFFGTD 180
  181 WCDIWRSLDV LFSTASILNL CVISLDRYWA ITDPFSYPMR MTVKRAAGLI AAVWICSSAI 240
  241 SFPAIVWWRA ARDGEMPAYK CTFTEHLGYL VFSSTISFYL PLLVMVFTYC RIYRAAVIQT 300
  301 RSLKIGTKQV LMASGELQLT LRIHRGGTTR DQQNQVSGGG GGGGGGGGGG GSLSHSHSHS 360
  361 HHHHHNHGGG TTTSTPEEPD DEPLSALHNN GLARHRHMGK NFSLSRKLAK FAKEKKAAKT 420
  421 LGIVMGVFII CWLPFFVVNL LSGFCIECIE HEEIVSAIVT WLGWINSCMN PVIYACWSRD 480
  481 FRRAFVRLLC MCCPRKIRRK YQPTMRSKSQ CHVAAAMVAA STSFGYHSVN QIDRTLM