YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1907-PA
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATSVQEAP KKAVATNAIK FLFGGLSGMG ATMVVQPLDL VKTRMQISGA GSGKKEYRSS  60
   61 LHCIQTIVSK EGPLALYQGI GAALLRQATY TTGRLGMYTY LNDLFREKFQ RSPGITDSMA 120
  121 MGTIAGACGA FIGTPAEVAL VRMTSDGRLP VAERRNYTNV ANALARITRE EGLTALWRGS 180
  181 LPTVGRAMVV NMTQLASYSQ FKTYFRHGPL QMEEGIKLHF CASMLSGLLT TITSMPLDIA 240
  241 KTRIQNMKMV DGKPEYRGTA DVLLRVARQE GVFALWKGFT PYYCRLGPHT VLTFIILEQL 300
  301 NQGYNKYVLG SNKSTGL

Type	Start	End	Confidence
Cytoplasmic	1	17	0.71
Transmembrane Helix	18	38	0.61
Non-Cytoplasmic	39	217	0.58
Transmembrane Helix	218	239	0.54
Cytoplasmic	240	317	0.57