YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG14511-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	38	0.77
Transmembrane Helix	39	60	0.88
Cytoplasmic	61	69	0.80
Transmembrane Helix	70	88	0.96
Non-Cytoplasmic	89	96	0.77
Transmembrane Helix	97	116	0.95
Cytoplasmic	117	124	0.82
Transmembrane Helix	125	143	0.96
Non-Cytoplasmic	144	161	0.91
Transmembrane Helix	162	183	0.94
Cytoplasmic	184	199	0.89
Transmembrane Helix	200	218	0.85
Non-Cytoplasmic	219	232	0.81
Transmembrane Helix	233	253	0.87
Cytoplasmic	254	260	0.63
Transmembrane Helix	261	290	0.66
Non-Cytoplasmic	291	297	0.81
Transmembrane Helix	298	318	0.95
Cytoplasmic	319	322	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSIRAISA ICGVFLGCCS GVVFLELLVK LDPGAGNLIT GAQFAFIALE GFIFTSKFGL  60
   61 AQRVISLRDY ALLVAMFFLT SVCNNYVFKF KVPMTLHMII RGGSLISNMC LCTLILKRSY 120
  121 RLSQYISVLM ISVGIFVCTY FSSPDLVGKM ENLDSGAEAD TFWWLLGVAL LVLALFVSSY 180
  181 MGITQELLYR RHGKCAREAL YYTHLLPLPA FLLMHDDIRT HWLLAFTGES YQLPLLGVAV 240
  241 PLILLYLLGN VLAQHLCISS VYTLTTECSS LTVTLILTLR KFISLVFSIV YFRNPFTWWH 300
  301 WLGTALVFVG TLMFANVIRV PK