YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vha100-1-PC, Vha...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.73
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	425	0.95
Transmembrane Helix	426	448	0.92
Cytoplasmic	449	467	0.87
Transmembrane Helix	468	488	0.89
Non-Cytoplasmic	489	557	0.73
Transmembrane Helix	558	579	0.88
Cytoplasmic	580	590	0.46
Transmembrane Helix	591	614	0.84
Non-Cytoplasmic	615	661	0.70
Transmembrane Helix	662	681	0.94
Cytoplasmic	682	755	0.92
Transmembrane Helix	756	777	0.78
Non-Cytoplasmic	778	786	0.72
Transmembrane Helix	787	811	0.83
Cytoplasmic	812	855	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLFRSEEM ALCQLFLQSE AAYACVSELG ELGLVQFRDL NPDVNAFQRK FVNEVRRCDE  60
   61 MERKLRYLEK EIKKDGIPML DTGESPEAPQ PREMIDLEAT FEKLENELRE VNQNAEALKR 120
  121 NFLELTELKH ILRKTQVFFD ESVPTVYKSS GAYSSSKYRR YPQMADNQNE DEQAQLLGEE 180
  181 GVRASQPGQN LKLGFVAGVI LRERLPAFER MLWRACRGNV FLRQAMIETP LEDPTNGDQV 240
  241 HKSVFIIFFQ GDQLKTRVKK ICEGFRATLY PCPEAPADRR EMAMGVMTRI EDLNTVLGQT 300
  301 QDHRHRVLVA AAKNLKNWFV KVRKIKAIYH TLNLFNLDVT QKCLIAECWV PLLDIETIQL 360
  361 ALRRGTERSG SSVPPILNRM QTFENPPTYN RTNKFTKAFQ ALIDAYGVAS YREMNPAPYT 420
  421 IITFPFLFAV MFGDLGHGAI MALFGLWMIR KEKGLAAQKT DNEIWNIFFG GRYIIFLMGV 480
  481 FSMYTGLIYN DIFSKSLNIF GSHWHLSYNK STVMENKFLQ LSPKGDYEGA PYPFGMDPIW 540
  541 QVAGANKIIF HNAYKMKISI IFGVIHMIFG VVMSWHNHTY FRNRISLLYE FIPQLVFLLL 600
  601 LFFYMVLLMF IKWIKFAATN DKPYSEACAP SILITFIDMV LFNTPKPPPE NCETYMFMGQ 660
  661 HFIQVLFVLV AVGCIPVMLL AKPLLIMQAR KQANVQPIAG ATSDAEAGGV SNSGSHGGGG 720
  721 GHEEEEELSE IFIHQSIHTI EYVLGSVSHT ASYLRLWALS LAHAQLAEVL WTMVLSIGLK 780
  781 QEGPVGGIVL TCVFAFWAIL TVGILVLMEG LSAFLHTLRL HWVEFQSKFY KGQGYAFQPF 840
  841 SFDAIIENGA AAAEE