YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or98a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNYLRKPN PTNLLTSPDS FRYFEYGMFC MGWHTPATHK IIYYITSCLI FAWCAVYLPI  60
   61 GIIISFKTDI NTFTPNELLT VMQLFFNSVG MPFKVLFFNL YISGFYKAKK LLSEMDKRCT 120
  121 TLKERVEVHQ GVVRCNKAYL IYQFIYTAYT ISTFLSAALS GKLPWRIYNP FVDFRESRSS 180
  181 FWKAALNETA LMLFAVTQTL MSDIYPLLYG LILRVHLKLL RLRVESLCTD SGKSDAENEQ 240
  241 DLIKCIKDHN LIIDYAAAIR PAVTRTIFVQ FLLIGICLGL SMINLLFFAD IWTGLATVAY 300
  301 INGLMVQTFP FCFVCDLLKK DCELLVSAIF HSNWINSSRS YKSSLRYFLK NAQKSIAFTA 360
  361 GSIFPISTGS NIKVAKLAFS VVTFVNQLNI ADRLTKN

Type	Start	End	Confidence
Cytoplasmic	1	40	0.96
Transmembrane Helix	41	64	0.92
Non-Cytoplasmic	65	83	0.83
Transmembrane Helix	84	102	0.90
Cytoplasmic	103	138	0.93
Transmembrane Helix	139	161	0.84
Non-Cytoplasmic	162	189	0.90
Transmembrane Helix	190	213	0.87
Cytoplasmic	214	266	0.97
Transmembrane Helix	267	288	0.93
Non-Cytoplasmic	289	295	0.73
Transmembrane Helix	296	315	0.83
Cytoplasmic	316	397	0.79