YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5646-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWENYCDFV AGCFGGACGV LVAHPLDTIK VWQQASNSSV VTAIQQIYSR NNGVNGFYRG  60
   61 MFFPFISTGA INSLLFGIYG NHLRQLRKVC HSDYQREQLE YHNMFLAGSV AGFVQSFIAC 120
  121 PMELIKVRLQ TATYYSDYLY GQRRTAFGTF KRILKTDGIS GLYRGLLPMM CRDVLPYGIY 180
  181 MLAYRQGVDY MDRRDFVRRR RSQSDGSSVN LLVTTLAGAW AGVISWVCVI PFDVVKTLMQ 240
  241 ADENHKYRGI FHCVRVQYRA YGWRSIFRGS WMLVARAVPF NAATFLGYEY ALEWCQRWNG 300
  301 TYV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	26	0.86
Non-Cytoplasmic	27	60	0.87
Transmembrane Helix	61	80	0.94
Cytoplasmic	81	207	0.60
Transmembrane Helix	208	230	0.83
Non-Cytoplasmic	231	271	0.63
Transmembrane Helix	272	292	0.65
Cytoplasmic	293	303	0.54