YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr98d-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANRSRLLA AARPYIQIYS IFGLTPPIQF FTRTLHKRRR GIVILGYACY LISISLMVIY  60
   61 ECYANIVALQ KDIHKFHAED SSKVMGNTQK VLVVAMFVWN QLNILLNFRR LARIYDDIAD 120
  121 LEIDLNNASS GFVGQRHWWR FRFRLALSVG LWIVLLVGLT PRFTLVALGP YLHWTNKVLT 180
  181 EIILIMLQLK CTEYCVFVLL IYELILRGRH ILQQISVELE GNQSRDSVQE LCVALKRNQL 240
  241 LAGRIWGLVN EVSLYFTLSL TLLFLYNELT ILQIVNWALI KSVNPNECCQ YRRVGTCLLL 300
  301 SINIFLSCLY SEFCIQTYNS ISRVLHQMYC LSAAEDYLIL KMGLREYSLQ MEHLKLIFTC 360
  361 GGLFDINLKF FGGMVVTLFG YIIILVQFKI QFFAQSNFMQ NINSTELKAY TA

Type	Start	End	Confidence
Cytoplasmic	1	40	0.61
Transmembrane Helix	41	64	0.83
Non-Cytoplasmic	65	87	0.64
Transmembrane Helix	88	105	0.62
Cytoplasmic	106	144	0.91
Transmembrane Helix	145	165	0.92
Non-Cytoplasmic	166	181	0.84
Transmembrane Helix	182	205	0.65
Cytoplasmic	206	245	0.72
Transmembrane Helix	246	267	0.60
Non-Cytoplasmic	268	365	0.48
Transmembrane Helix	366	390	0.79
Cytoplasmic	391	412	0.53