YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr98c-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMEAKRSRL LTTARPYLQV LSLFGLTPPA EFFTRTLRKR RRFCWMAGYS LYLIAILLMV  60
   61 FYEFHANIVS LHLEIYKFHV EDFSKVMGRT QKFLIVAIAT CNQLNILLNY GRLGLIYDEI 120
  121 ANLDLGIDKS SKNFCGKSHW WSFRLRLTLS IGLWMVIIIG VIPRLTLGRA GPFFHWVNQV 180
  181 LTQIILIMLQ LKGPEYCLFV LLVYELILRT RHVLEQLKDD LEDFDCGARI QELCVTLKQN 240
  241 QLLIGRIWRL VDEIGAYFRW SMTLLFLYNG LTILHVVNWA IIRSIDPNDC CQLNRLGSIT 300
  301 FLSFNLLLTC FFSECCVKTY NSISYILHQI GCLPTAEEFQ MLKMGLKEYI LQMQHLKLLF 360
  361 TCGGLFDINI KLFGGMLVTL CGYVIIIVQF KIQDFALIGY RQNTSDTS

Type	Start	End	Confidence
Cytoplasmic	1	42	0.86
Transmembrane Helix	43	66	0.86
Non-Cytoplasmic	67	92	0.85
Transmembrane Helix	93	111	0.53
Cytoplasmic	112	146	0.60
Transmembrane Helix	147	167	0.91
Non-Cytoplasmic	168	183	0.53
Transmembrane Helix	184	204	0.52
Cytoplasmic	205	255	0.68
Transmembrane Helix	256	277	0.81
Non-Cytoplasmic	278	367	0.47
Transmembrane Helix	368	392	0.74
Cytoplasmic	393	408	0.53