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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: side-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLLPTSGM PTNTLETETP AMQTTYWPRQ TGNSKSKSNT NCKCNINTHR KSRTRCPDNG  60
   61 KTIWAVGFTL VLLTCLQQLK SVSADEESQD FQKNIPARLV WAALGKTVEL PCDLTPPTSQ 120
  121 DSVKLLLWFK DTTGIPLYSL DSRGGNVKLA PHAAIASDLG QRLFFSIGDN PKDSRLQIND 180
  181 VKPEDGGVYR CRVDFFNSPT RNFRHNLTLV VPPEEPRIFD AQGKEISQMA GPFREGYELF 240
  241 LCCQVRGGRP PPKVTWWRDD TELIGTSHTS VEEGATVMVN QLLIGTTTRD FYGIRIECRA 300
  301 QGTRLVDPVR KDVTVQVYLK PVRVKIATPN ELLTAGQPMP IRCESWGSYP AAKITWLLDG 360
  361 EPIRNAEVTV HSDKEDGNIT TSILTLKVTS ENDNAELTCR ATNPWFSGGA IEDKRIIRVA 420
  421 YPPTVSVHLA NEDPSRLVTR AEGQNVTFKC RADARPPVTS YSWFKNGMRM SGESTEIMHL 480
  481 TQLERESAGA YACGATNTEG ETRSSSLTLK VQFSPRCKSG TEQTSIGAVS LHSILVKCEV 540
  541 DADPPDSVRF SWTYNNTRNV SPVLNSRIQS NGLASTVTYL PQTDSELITL ACWASNAVGR 600
  601 QTTPCLVHIL PANTPEAPKA CELRNDTVLE VVCVAGSDGG LSQYFMLEVV GGDPLYSGDP 660
  661 GGSAGQGRGQ FSEAIGLGDN EISTLNDQAT SAPIFRMQEN SPQFRLNNLE PGREYQFLVY 720
  721 AVNAKGRSEP PVVIENVRVA AQLGPYDESI LSEDPTPAET THHGGGGVGG SGSSSGLGTG 780
  781 ASTGSGPEKQ STLLILAAVV VIGAVVVTSI IVAGIVVVCR HRPRPPEPQE VRKSMRPARN 840
  841 DVPSMYIEED ELNELEEGGG RAADIRARVA PPNSHLCGGG GMPMPGGVGS SGGAIVGVAG 900
  901 PHHYISESFI QYAQPSLNDP DLILPRGELE FTTLDPTLK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle