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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68067575
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.52
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRKHFRRKP ATSSSLESTI ESADSLGMSK KTATKRQRPR HRVPKIATLP STIRDCRSLK  60
   61 SACNLIALIL ILLVHKISAA GNFELEILEI SNTNSHLLNG YCCGMPAELR ATKTIGCSPC 120
  121 TTAFRLCLKE YQTTEQGASI STGCSFGNAT TKILGGSSFV LSDPGVGAIV LPFTFRWTKS 180
  181 FTLILQALDM YNTSYPDAER LIEETSYSGV ILPSPEWKTL DHIGRNARIT YRVRVQCAVT 240
  241 YYNTTCTTFC RPRDDQFGHY ACGSEGQKLC LNGWQGVNCE EAICKAGCDP VHGKCDRPGE 300
  301 CECRPGWRGP LCNECMVYPG CKHGSCNGSA WKCVCDTNWG GILCDQDLNF CGTHEPCKHG 360
  361 GTCENTAPDK YRCTCAEGLS GEQCEIVEHP CATRPCRNGG TCTLKTSNRT QAQVYRTSHG 420
  421 RSNMGRPVRR SSSMRSLDHL RPEGQALNGS SSPGLVSLGS LQLQQQLAPD FTCDCAAGWT 480
  481 GPTCEINIDE CAGGPCEHGG TCIDLIGGFR CECPPEWHGD VCQVDVNECE APHSAGIAAN 540
  541 ALLTTTATAI IGSNLSSTAL LAALTSAVAS TSLAIGPCIN AKECRNQPGS FACICKEGWG 600
  601 GVTCAENLDD CVGQCRNGAT CIDLVNDYRC ACASGFKGRD CETDIDECAT SPCRNGGECV 660
  661 DMVGKFNCIC PLGYSGSLCE EAKENCTPSP CLEGHCLNTP EGYYCHCPPD RAGKHCEQLR 720
  721 PLCSQPPCNE GCFANVSLAT SATTTTTTTT TATTTRKMAK PSGLPCSGHG SCEMSDVGTF 780
  781 CKCHVGHTGT FCEHNLNECS PNPCRNGGIC LDGDGDFTCE CMSGWTGKRC SERATGCYAG 840
  841 QCQNGGTCMP GAPDKALQPH CRCAPGWTGL FCAEAIDQCR GQPCHNGGTC ESGAGWFRCV 900
  901 CAQGFSGPDC RINVNECSPQ PCQGGATCID GIGGYSCICP PGRHGLRCEI LLSDPKSACQ 960
  961 NASNTISPYT ALNRSQNWLD IALTGRTEDD ENCNACVCEN GTSRCTNLWC GLPNCYKVDP1020
 1021 LSKSSNLSGV CKQHEVCVPA LSETCLSSPC NVRGDCRALE PSRRVAPPRL PAKSSCWPNQ1080
 1081 AVVNENCARL TILLALERVG KGASVEGLCS LVRVLLAAQL IKKPASTFGQ DPGMLMVLCD1140
 1141 LKTGTNDTVE LTVSSSKLND PQLPVAVGLL GELLSFRQLN GIQRRKELEL QHAKLAALTS1200
 1201 IVEVKLETAR VADGSGHSLL IGVLCGVFIV LVGFSVFISL YWKQRLAYRT SSGMNLTPSL1260
 1261 DALRHEEEKS NNLQNEENLR RYTNPLKGST SSLRAATGME LSLNPAPELA ASAASSSALH1320
 1321 RSQPLFPPCD FERELDSSTG LKQAHKRSSQ ILLHKTQNSD MRKNTVGSLD SPRKDFGKRS1380
 1381 INCKSMPPSS GDEGSDVLAT TVMV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle