YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5484-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYNPNPGMR NPSAAGRPRP PKRVSDVNAM GPSAPMMGGG ATFMAPPTGP GILDPNMYGA  60
   61 PAPAPVNSYG FDPNLGQPSQ HIQQPPQQQP GYGYGAPPPQ QAAGPPTYGI GAPQPVAPPT 120
  121 GQYPQFAMFQ QPIVQDMAMQ YGQKLADQGK QIMENQFEKW VPVAKLKYYF AVDNAYVGRK 180
  181 LRLLFFPYMH KDWSLRYDQE HPVQPRYDVN APDLYLPTMG YITYVIVAGL LLGMQKRFSP 240
  241 EQLGIQASSA MAYSIFELVI YSLALYVMNV KTSLKTLDLL AFTGYKYVNI VVCLMVSTLF 300
  301 FKSGYYIALA YTSFSFGFFM LRTLRTKLLQ DNSPAAPSGA INYDPYGNPQ QFDYSGGKKR 360
  361 KLYFLFMIVA GQALFAFLLS KHLYLPEAEV LTVPKTF

Type	Start	End	Confidence
Cytoplasmic	1	213	0.53
Transmembrane Helix	214	234	0.74
Non-Cytoplasmic	235	246	0.55
Transmembrane Helix	247	270	0.81
Cytoplasmic	271	281	0.52
Transmembrane Helix	282	301	0.65
Non-Cytoplasmic	302	304	0.67
Transmembrane Helix	305	324	0.83
Cytoplasmic	325	361	0.93
Transmembrane Helix	362	384	0.89
Non-Cytoplasmic	385	397	0.92