YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG33970-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAEESPDYL RQQYNADSLE DVFLKLSVLQ NMGKRRRSSI AQEIVEQVTV PAISNPALDM  60
   61 SDEQHAAEIS GEFGDNISMS SAARDPISTT APAAPPLPPP QEIPTSFWYN LHVMQSHHLH 120
  121 ALIWKNFLWM MRNVGVMLFI VGLPVVQILL FCYAIGHDPT GLKLAVANHE MSGEMIMEQF 180
  181 CPVHTGCNQT MLSCRYLDML VKNKSMVVQY VTDDEMAYEE VRKGRAWAAL VIQPNYTASL 240
  241 MERVEDGRYA EDGTIESSDL AVRMDWSNQQ ISQLLYRDLQ YTFFNFVGDM LSDCDVNPKL 300
  301 GRVPVDFQHP VYGYRNPNFT DFAAPGVILT IIFFLAVAVT SGAMLIDRNE GMLERCLVAG 360
  361 ITGPEILLSQ VVTQFTVMLS QTTFVLIVSF YFFELTLVGN IWLVVALCIL NGLCGMSFGF 420
  421 VISCAVDTER TATYVAMGSF LPIVMLCGII WPIEGMFPLL QFFTAFLPLT KPTESMRSIL 480
  481 QRGWGIDNPV VYNGFISISS WVLVFLVLTI LLLKFKKG

Type	Start	End	Confidence
Cytoplasmic	1	133	0.94
Transmembrane Helix	134	155	0.89
Non-Cytoplasmic	156	321	0.98
Transmembrane Helix	322	346	0.89
Cytoplasmic	347	365	0.85
Transmembrane Helix	366	393	0.71
Non-Cytoplasmic	394	400	0.79
Transmembrane Helix	401	422	0.95
Cytoplasmic	423	432	0.78
Transmembrane Helix	433	453	0.94
Non-Cytoplasmic	454	490	0.94
Transmembrane Helix	491	513	0.91
Cytoplasmic	514	518	0.86