YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG17370-PA, CG17...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.77
Transmembrane Helix	9	29	0.72
Non-Cytoplasmic	30	45	0.74
Transmembrane Helix	46	66	0.74
Cytoplasmic	67	105	0.95
Transmembrane Helix	106	127	0.89
Non-Cytoplasmic	128	131	0.87
Transmembrane Helix	132	154	0.90
Cytoplasmic	155	170	0.86
Transmembrane Helix	171	193	0.89
Non-Cytoplasmic	194	198	0.66
Transmembrane Helix	199	219	0.89
Cytoplasmic	220	226	0.75
Transmembrane Helix	227	247	0.89
Non-Cytoplasmic	248	298	0.95
Transmembrane Helix	299	319	0.92
Cytoplasmic	320	345	0.90
Transmembrane Helix	346	365	0.94
Non-Cytoplasmic	366	374	0.75
Transmembrane Helix	375	394	0.94
Cytoplasmic	395	417	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHGGAGGGL GAQTVGAGQL GGGAAAAGGG EYRELHWTVS SVMDSSRVST CLISMLLIVY  60
   61 GSFRSLNIEQ EAREREQKKR NESMTNLLTG EPVEKEPTDK FATLDTMHAL CLPLGASISL 120
  121 LIMFFFFDSM QLLFAVCTAI IATVALAFLL LPMCQYIIRP CTDGKRFSFG FCGRFTAAEL 180
  181 FSFTLSVSIV CIWVLTGHWL LMDAMGMGLC VAFIAFVRLP SLKVSTLLLT GLLIYDVFWV 240
  241 FLSSYIFSTN VMVKVATRPA DNPVGIVARK LHLGGIVRDT PKLNLPGKLV FPSLHNTGHF 300
  301 SMLGLGDVVM PGLLLCFVLR YDAYKKAQGV TSDPTLSPPR GVGSRLTYFH CSLLGYFLGL 360
  361 LTATVSSEVF KAAQPALLYL VPFTLLPLLL MAYLKGDLRR MWSEPFIAQQ PSKQLEV