YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0293017, Esp-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.95
Transmembrane Helix	99	120	0.76
Non-Cytoplasmic	121	125	0.55
Transmembrane Helix	126	146	0.84
Cytoplasmic	147	174	0.61
Transmembrane Helix	175	197	0.90
Non-Cytoplasmic	198	249	0.55
Transmembrane Helix	250	270	0.69
Cytoplasmic	271	291	0.87
Transmembrane Helix	292	315	0.88
Non-Cytoplasmic	316	359	0.86
Transmembrane Helix	360	382	0.72
Cytoplasmic	383	434	0.71
Transmembrane Helix	435	457	0.84
Non-Cytoplasmic	458	461	0.59
Transmembrane Helix	462	480	0.88
Cytoplasmic	481	493	0.70
Transmembrane Helix	494	525	0.76
Non-Cytoplasmic	526	654	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNPASDHV YFNDGFKCST ISISTNLTEP NGSSNSVGSQ GSKEFILTED GKKVKPTVST  60
   61 LDCTRSWLQD CQRRTFNRKT LHKRLPILGW LPKYNSQDAV GDLVAGITVG LTVIPQALAY 120
  121 AGIAGLPVAY GLYASFVGCF VYIFLGSCKD VPMGPSAIVA LLTYQAAQGS WQKSVLLCLL 180
  181 SGIVELLMGL FGLGFLIDFV SGPVSSGFTS AVSLIILTSQ IQSVLGITAK GNTFVEIWTQ 240
  241 VFHNIEHTRA GDTVLGLTCI VILLLMRSLS SCRIGPVDEK ECSSFQRAVN KILWIVGTAR 300
  301 NAILVVVCCI MGYMLHTEEH GAPFRVVGEI PPGLPSIQLP PTSLTANETS NGVAEGFVEM 360
  361 VHSMGSGLVV IPLISLMENI AICKAFANGK PVDASQELIA IGTANIFNSF VQAFPGTGAL 420
  421 SRGAVNNASG VRTPLSNIYS GGLVMIALLF LTPYFYFIPR PTLAAIIISA VVFMIEVKVV 480
  481 KPMWRSKKSD LVPGVGTFVA CLVLPLEWGI LIGVGLNVIF ILYHAARPKL STELLTTQSG 540
  541 VEYSMITPDR CLIFPSVDYV RNLVNKQSIR QNVPVVIDAS HVYGADFTTA TVIDSLISDF 600
  601 NQRGQLLFFY NLKPSICSIF EHVSAAQFVV YYQEQQLDEL LKERNYVQKR LETA