YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nAcRalpha-96Ab-P...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGCCTTRP RPIALLAHIW RHCKPLCLLL VLLLLCETVQ ANPDAKRLYD DLLSNYNRLI  60
   61 RPVSNNTDTV LVKLGLRLSQ LIDLNLKDQI LTTNVWLEHE WQDHKFKWDP SEYGGVTELY 120
  121 VPSEHIWLPD IVLYNNADGE YVVTTMTKAI LHYTGKVVWT PPAIFKSSCE IDVRYFPFDQ 180
  181 QTCFMKFGSW TYDGDQIDLK HISQKNDKDN KVEIGIDLRE YYPSVEWDIL GVPAERHEKY 240
  241 YPCCAEPYPD IFFNITLRRK TLFYTVNLII PCVGISYLSV LVFYLPADSG EKIALCISIL 300
  301 LSQTMFFLLI SEIIPSTSLA LPLLGKYLLF TMLLVGLSVV ITIIILNIHY RKPSTHKMRP 360
  361 WIRSFFIKRL PKLLLMRVPK DLLRDLAANK INYGLKFSKT KFGQALMDEM QMNSGGSSPD 420
  421 SLRRMQGRVG AGGCNGMHVT TATNRFSGLV GALGGGLSTL SGYNGLPSVL SGLDDSLSDV 480
  481 AARKKYPFEL EKAIHNVMFI QHHMQRQDEF NAEDQDWGFV AMVMDRLFLW LFMIASLVGT 540
  541 FVILGEAPSL YDDTKAIDVQ LSDVAKQIYN LTEKKN

Type	Start	End	Confidence
Signal Peptide	1	41	0.99
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	261	0.99
Transmembrane Helix	262	285	0.92
Cytoplasmic	286	292	0.92
Transmembrane Helix	293	314	0.89
Non-Cytoplasmic	315	327	0.77
Transmembrane Helix	328	350	0.93
Cytoplasmic	351	445	0.98
Transmembrane Helix	446	466	0.55
Non-Cytoplasmic	467	526	0.62
Transmembrane Helix	527	545	0.96
Cytoplasmic	546	576	0.61