YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Orct-PA, FBpp0306893
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.80
Transmembrane Helix	20	38	0.82
Non-Cytoplasmic	39	127	0.88
Transmembrane Helix	128	149	0.81
Cytoplasmic	150	159	0.84
Transmembrane Helix	160	178	0.96
Non-Cytoplasmic	179	185	0.73
Transmembrane Helix	186	207	0.91
Cytoplasmic	208	215	0.84
Transmembrane Helix	216	238	0.91
Non-Cytoplasmic	239	244	0.78
Transmembrane Helix	245	264	0.95
Cytoplasmic	265	337	0.99
Transmembrane Helix	338	357	0.91
Non-Cytoplasmic	358	366	0.83
Transmembrane Helix	367	388	0.89
Cytoplasmic	389	395	0.83
Transmembrane Helix	396	414	0.97
Non-Cytoplasmic	415	419	0.86
Transmembrane Helix	420	443	0.88
Cytoplasmic	444	450	0.86
Transmembrane Helix	451	474	0.83
Non-Cytoplasmic	475	482	0.74
Transmembrane Helix	483	503	0.94
Cytoplasmic	504	548	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYDDVITHL GEFGPYQKRI YYLLCLPAIV CAFHKLAGVF LLAKPDFRCA LPYENGSIYE  60
   61 LSPHLWNLSY PENERCSYYD VDYTEEYLNG SIPRSSNETK TCSSYVYDRS KYLNSAVTEW 120
  121 NLVCSRSLLS ATSDSLFMLG VLLGSLIFGQ MSDKLGRKPT FFASLVLQLI FGVLAAVAPE 180
  181 YFSYTISRMI VGATTSGVFL VAYVIALEMV GSSYRLFAGV AMQMFFSVGF MLTAGFAYFI 240
  241 HDWRWLQIAI TLPGLLFLCY YWIIPESARW LLMKGRKDEA FVIIEKAAKE NKVEVPNEIY 300
  301 EQLVDEVAEK KKQDEMAASQ PAATVFDLLR YPNLRRKTLL IFFDWFVNSG VYYGLSWNTN 360
  361 NLGGNQLVNF MISGAVEIPG YTLLLFTLNR WGRRSILCGT MMVAGISLLA TIFVPSDMNW 420
  421 LIVACAMIGK LAITSSYGTI YIFSAEQFPT VVRNVGLGAS SMVARVGGIL APYLKLLGEI 480
  481 WRPLPLIICG ALSLTAGLLS LLLPETLNKP MPETIEDGEN FGKKPAPQET AEEGGTQELS 540
  541 GMLNGKSG