YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Syx1A-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDRLAALH AAQSDDEEET EVAVNVDGHD SYMDDFFAQV EEIRGMIDKV QDNVEEVKKK  60
   61 HSAILSAPQT DEKTKQELED LMADIKKNAN RVRGKLKGIE QNIEQEEQQN KSSADLRIRK 120
  121 TQHSTLSRKF VEVMTEYNRT QTDYRERCKG RIQRQLEITG RPTNDDELEK MLEEGNSSVF 180
  181 TQGIIMETQQ AKQTLADIEA RHQDIMKLET SIKELHDMFM DMAMLVESQG EMIDRIEYHV 240
  241 EHAMDYVQTA TQDTKKALKY QSKARRKKIM ILICLTVLGI LAASYVSSYF M

Type	Start	End	Confidence
Cytoplasmic	1	268	0.98
Transmembrane Helix	269	289	0.92
Non-Cytoplasmic	290	291	0.89