YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220943864
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSYFVPRGR FLLKAGNLRQ VVQQQHQPAQ LQLQPIKGPQ PQAQNASLPV ARHLRQFSSN  60
   61 PASKEAPLHH RRPQHKQQPN PSQELAQIRR NILSRWTGFL LRWAPMGICV FGAIEWQLQK 120
  121 NRCEKEGKPR TASELQSRIY CSLPLRIISR CWGWLAACYL PPSLRPYVYG WYSNTFDVNL 180
  181 SEAMYPEYEH YNSLAEFFTR PLKEGVRVID QQAPLVSPAD GKVLHFGSAS DSLIEQVKGV 240
  241 SYSIEDFLGP LETVEQANSG ASYAQALKKK SDGSTELYQC VIYLAPGDYH RFHSPTAWKP 300
  301 TIRRHFSGEL LSVSPKVAGW LPGLFCLNER VLYMGQWKHG FFSYTAVGAT NVGSVEIYMD 360
  361 ADLKTNRWTG FNVGKHPPST YEYDELVLNK ELTEAPKEFG KGDLVGQFNM GSTIVLLFEA 420
  421 PKNFKFDIIA GQKIRVGESL GHIVGSK

Type	Start	End	Confidence
Cytoplasmic	1	97	0.65
Transmembrane Helix	98	114	0.64
Non-Cytoplasmic	115	447	0.98