YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG10168-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLGYAWLAF GLLLHLNLYL ELGQAANILG VFPYRIPSPF QMVRPLIKAL VERGHKVTMV  60
   61 TPADYPAKID GVRHIRVPML NQLMQNLMKN DQFFDALGDK WREGVLVSTI FYNVSHAILN 120
  121 NNGVQMLMRD KSIRFDMIMV EASHLDALYG LAEFYNATLL GISCMHMTWH IDYLAGNLAP 180
  181 SVYEPISPNG FALDNTFLSR WSNWIYITEE KLLERLVFRP AQVRLFKKFF GYPAEKLDEL 240
  241 RARFSVILVN SHFSMGRVRA NVPNIIEVAG VHLSEPPEPC GAELQKYLDE AEHGAIYFSM 300
  301 GQDILIKYLP ENMQKQLLLV FLQMKQRVIW KSELSMLANK SENIYVMDKV PQRMVLAHPN 360
  361 LRLFITHGGL QSVMEAIDNG VPMLGLPLFF DQFNNIHRVQ LAGMAKVLDP NDLNADTLIE 420
  421 TIKELLENPS YAQRAKEMAA SFRDRPMSPL DTAIWWTEYA LRNRDTSHMR LNVEEIPLMR 480
  481 YYRLDSILTF GVRLGCVCGS LIFLGWRLYQ KNRNRHTRLQ ERERVIAQIQ LGLSNYEVVS 540
  541

Type	Start	End	Confidence
Signal Peptide	1	25	0.88
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	486	0.99
Transmembrane Helix	487	509	0.83
Cytoplasmic	510	540	0.89