YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG10170-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.29
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLEFYWLAV LFCLFLQKDL YQDSVQAANI LGIFSYHFSS HNLVVRPLAK ALVKRGHNVT  60
   61 LITPVGMPTD IEGVRHIRVP KLNQRVQEMI EGDQILDFFG SKWIASLMVV SMLYNMSSDI 120
  121 LSDKGVQKML QNRNERFDLV MLEPSALEAL YGVVEHYNAT LMGFSGGNVN WSTEEVAGNF 180
  181 APSINDPISS LGYSRSNSLL SKIYNWVHIT EEKLLKHLIF RPSQLRIFKK FFNFSEQKFY 240
  241 NMREKYSVIL VNNHISMGRV RSNVPNIIEV GGLHLTEPAE PCDSKLQKFM DDAEHGVIYF 300
  301 SMGQEIMVQF LPEDMQQNLM KSLDQFKQRV VWKTELYNMP NKSDNVYVIE QPPQRAVLAH 360
  361 PNTRLFITNG GLLSVMEAVY SGVPILGLPV FFDQFINLRN VNLRGMAEVL DANEMTLEIL 420
  421 TSTIRKLLEN PRYALKAKKM SQSFRDRPMS PLDTAVWWTE YALRNKDASH MRLNTEDVPL 480
  481 YYEWDWGLLL GLRFGIVFGS VIYLVYKLFQ KTSARRRPFQ VTGTVSQHPS LLDRRSQTQ

Type	Start	End	Confidence
Signal Peptide	1	22	0.33
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	488	0.65
Transmembrane Helix	489	509	0.84
Cytoplasmic	510	539	0.89