YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Irk2-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVPLSDVQV LQDPTDAETL VGGDKEETFA HMKEWKRQYM RGISHTPSQA GVYYEALKGS  60
   61 SHSLAKGSRN FRPGSMRRVR RRAVFKNGDC NVVQKHLQRR RVRFLQDMYT TMVDWQWRWT 120
  121 LLAFALSFIL SWLFFALIWW LIIYTHGDLE EPHLPENQEE SGWAPCVSAI DGFTSCFLFS 180
  181 IETQHTIGYG VRTTSPECPE AIFMMCFQSI YGVMSSAFMA GIVFAKMTRA KQRAQTLLFS 240
  241 KHAVICQRDG TLSLMFRVGD MRKSHIIGAG VRAQLIRTKS TKEGEVMTQY FTELEIGTDD 300
  301 SGSDLFFIWP MVIEHKIDEN SPLYNLNATD MLQDKFEIVV ILEGTVESTG QSTQARSSYI 360
  361 NTEILWGHRF DPVVLYNKDL QAYEIDYARF NETTQVDTPL CSARELNEIY KIQEGFRTPE 420
  421 TTFTMRQLSH NHSDQAS

Type	Start	End	Confidence
Cytoplasmic	1	119	0.96
Transmembrane Helix	120	143	0.91
Non-Cytoplasmic	144	203	0.82
Transmembrane Helix	204	225	0.87
Cytoplasmic	226	437	0.78