YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr94a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFTSDYAHR RMVKFLTIIL IGFMTVFGLL ANRYRAGRRE RFRFSKANLA FASLWAIAFS  60
   61 LVYGRQIYKE YQEGQINLKD ATTLYSYMNI TVAVINYVSQ MIISDHVAKV LSKVPFFDTL 120
  121 KEFRLDSRSL YISIVLALVK TVAFPLTIEV AFILQQRRQH PEMSLIWTLY RLFPLIISNF 180
  181 LNNCYFGAMV VVKEILYALN RRLEAQLQEV NLLQRKDQLK LYTKYYRMQR FCALADELDQ 240
  241 LAYRYRLIYV HSGKYLTPMS LSMILSLICH LLGITVGFYS LYYAIADTLI MGKPYDGLGS 300
  301 LINLVFLSIS LAEITLLTHL CNHLLVATRR SAVILQEMNL QHADSRYRQA VHGFTLLVTV 360
  361 TKYQIKPLGL YELDMRLISN VFSAVASFLL ILVQADLSQR FKMQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.86
Transmembrane Helix	12	34	0.87
Cytoplasmic	35	46	0.74
Transmembrane Helix	47	67	0.81
Non-Cytoplasmic	68	83	0.77
Transmembrane Helix	84	103	0.65
Cytoplasmic	104	129	0.78
Transmembrane Helix	130	153	0.85
Non-Cytoplasmic	154	171	0.77
Transmembrane Helix	172	192	0.85
Cytoplasmic	193	260	0.91
Transmembrane Helix	261	283	0.86
Non-Cytoplasmic	284	300	0.81
Transmembrane Helix	301	321	0.89
Cytoplasmic	322	376	0.76
Transmembrane Helix	377	397	0.82
Non-Cytoplasmic	398	404	0.59