YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or94b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTNRLSAI QTLLVIQRWI GLLKWENEGE DGVLTWLKRI YPFVLHLPLT FTYIALMWYE  60
   61 AITSSDFEEA GQVLYMSITE LALVTKLLNI WYRRHEAASL IHELQHDPAF NLRNSEEIKF 120
  121 WQQNQRNFKR IFYWYIWGSL FVAVMGYISV FFQEDYELPF GYYVPFEWRT RERYFYAWGY 180
  181 NVVAMTLCCL SNILLDTLGC YFMFHIASLF RLLGMRLEAL KNAAEEKARP ELRRIFQLHT 240
  241 KVRRLTRECE VLVSPYVLSQ VVFSAFIICF SAYRLVHMGF KQRPGLFVTT VQFVAVMIVQ 300
  301 IFLPCYYGNE LTFHANALTN SVFGTNWLEY SVGTRKLLNC YMEFLKRPVK VRAGVFFEIG 360
  361 LPIFVKTINN AYSFFALLLK ISK

Type	Start	End	Confidence
Cytoplasmic	1	42	0.91
Transmembrane Helix	43	62	0.83
Non-Cytoplasmic	63	70	0.78
Transmembrane Helix	71	90	0.79
Cytoplasmic	91	130	0.95
Transmembrane Helix	131	152	0.94
Non-Cytoplasmic	153	182	0.89
Transmembrane Helix	183	206	0.87
Cytoplasmic	207	251	0.91
Transmembrane Helix	252	276	0.77
Non-Cytoplasmic	277	284	0.75
Transmembrane Helix	285	307	0.85
Cytoplasmic	308	383	0.69