YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or94a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKHKDRIES MRLILQVMQL FGLWPWSLKS EEEWTFTGFV KRNYRFLLHL PITFTFIGLM  60
   61 WLEAFISSNL EQAGQVLYMS ITEMALVVKI LSIWHYRTEA WRLMYELQHA PDYQLHNQEE 120
  121 VDFWRREQRF FKWFFYIYIL ISLGVVYSGC TGVLFLEGYE LPFAYYVPFE WQNERRYWFA 180
  181 YGYDMAGMTL TCISNITLDT LGCYFLFHIS LLYRLLGLRL RETKNMKNDT IFGQQLRAIF 240
  241 IMHQRIRSLT LTCQRIVSPY ILSQIILSAL IICFSGYRLQ HVGIRDNPGQ FISMLQFVSV 300
  301 MILQIYLPCY YGNEITVYAN QLTNEVYHTN WLECRPPIRK LLNAYMEHLK KPVTIRAGNF 360
  361 FAVGLPIFVK TINNAYSFLA LLLNVSN

Type	Start	End	Confidence
Cytoplasmic	1	45	0.87
Transmembrane Helix	46	66	0.93
Non-Cytoplasmic	67	73	0.80
Transmembrane Helix	74	94	0.85
Cytoplasmic	95	133	0.96
Transmembrane Helix	134	156	0.96
Non-Cytoplasmic	157	186	0.95
Transmembrane Helix	187	212	0.81
Cytoplasmic	213	255	0.92
Transmembrane Helix	256	279	0.80
Non-Cytoplasmic	280	290	0.78
Transmembrane Helix	291	310	0.79
Cytoplasmic	311	359	0.82
Transmembrane Helix	360	376	0.55
Non-Cytoplasmic	377	387	0.52