YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4907-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.83
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	418	0.97
Transmembrane Helix	419	440	0.91
Cytoplasmic	441	457	0.88
Transmembrane Helix	458	479	0.93
Non-Cytoplasmic	480	484	0.83
Transmembrane Helix	485	502	0.92
Cytoplasmic	503	514	0.70
Transmembrane Helix	515	534	0.91
Non-Cytoplasmic	535	539	0.65
Transmembrane Helix	540	556	0.84
Cytoplasmic	557	562	0.83
Transmembrane Helix	563	584	0.89
Non-Cytoplasmic	585	591	0.78
Transmembrane Helix	592	615	0.82
Cytoplasmic	616	623	0.79
Transmembrane Helix	624	641	0.95
Non-Cytoplasmic	642	649	0.79
Transmembrane Helix	650	671	0.91
Cytoplasmic	672	680	0.93
Transmembrane Helix	681	705	0.82
Non-Cytoplasmic	706	759	0.90
Transmembrane Helix	760	781	0.91
Cytoplasmic	782	800	0.78
Transmembrane Helix	801	824	0.87
Non-Cytoplasmic	825	831	0.82
Transmembrane Helix	832	854	0.89
Cytoplasmic	855	868	0.85
Transmembrane Helix	869	891	0.88
Non-Cytoplasmic	892	919	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSIQALVVH LLLLGSILSI YFQSTILSDL EPLSTLRELG LEPPADRLVV FVVDGLRAQS  60
   61 VLADHCSAVP DLRELFVEQA LVGISRACPP TVTRPGHIAI FGGFNEDPAA TLTWNPSTFD 120
  121 SVFNRSRNAI GWMQAEVAKV FTHLPTGGAP LRFETFARSD ISDRLRLDQW TFDKVRNFMT 180
  181 NEQNVQPLRD ATSVIFFVYL ADIDLAEHVH MPNSLNFREK LNYTQRGIRQ TYELFESVFN 240
  241 DSRTAYLMTA DYGISLHGGG GERGVETPFI LWGAGVKRSA PNPGQNFTAG ENGPILPLYQ 300
  301 LEQIQLAPLM SALIGLPPPM NNMALMPLGF LNTSVQYELQ VLHLNAMQLL AQARILIKRH 360
  361 EDGILYLLLP KFESLGSAEI ENYPQIIKYL VAKEQYEEAL KVSHKIAKLA QECMEYYHGY 420
  421 YHLPLLVATT ASYLVWFYLL LVRLARESNH PKSERKGYLT WTTLMMCLGG LVLLELMILQ 480
  481 RVPHLTAFYL LLPFGILILA LAERPCQDRD LMCQFPVLHL VGIVMPGVLL ILMAFHNSHI 540
  541 GLLYLPIVCL NNRRAFFRPS LKLIFWLALV FLLSGILLVK QSASLHFITD TIGVYIGNSH 600
  601 VVYFSMILSI IRPLILGHQH STRVWIVNMA ALLVTAYGIY QWDADQPVCT YVYAACWSYL 660
  661 LFAFLSIPYS GTKDLRRRLE LIIFNMLTVH IMLTTSIGSL FVQIMVTEFV LGLELYEESF 720
  721 SYANLKDAIA NQQQNNQGLE ESRNESPNNP LEHVRQSYRY AALILLYLYI SFFGTGHWFF 780
  781 NFTFKPMTSR LFFPQFHLHM LVAFILLKIF IPSIIVMSSI YALVSFGRKN VRSIFICLFL 840
  841 MNDAMSLYFC YFVINRGSLE KVRESLDRLL VSHVFIILLL VCSWIAKGFL ANTKKDKPTP 900
  901 RAPVQAVTNN ANLAQDSQA