YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mRpL45-PA
Protein type:	Transmembrane
Type Confidence:	0.45
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLASAKTC LKLLQVMPGV QQAALLPGGG LGVLASPLQN LIQMQQVRHR QTKHWKPEFK  60
   61 RLRKLKFVKM DLPNLREKQE DITKEEMRSR MKERGVLPPR PWMERPFHIS CTGGIFEAYV 120
  121 PPEGDGKKSI ISTSGAKQKL EFLEKKSKSL MAVRKIRSYD ENFSSDDFGA EAQDIYIQAH 180
  181 THMAAKDKYK IREFVSERCY PEMMHNVKDK TIRWKFLQSL EPPRVVHARV TEVITKENQF 240
  241 AQVTVRFHSQ QMLAIYDRFG RLMHGSEIIT KDVLEYVVFE KHISNEYGKW RLHDKIIPDW 300
  301 LPAKQPAPIT YRLIEDAEEP PKELSAGDAE VKQVDSVGEQ SKEQLPLATP VESHTKPSLA 360
  361 I

Type	Start	End	Confidence
Cytoplasmic	1	17	0.37
Transmembrane Helix	18	36	0.41
Non-Cytoplasmic	37	361	0.96