YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG33110-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMNYHNYNS SSRFEMVVEI ANIALDEFKT HHITRNYTGL VQRYYQLVEE DYGDPRAKRF  60
   61 PLMEHPMFTF GMVAVYLSWV LVIGPLFMRD RKPFQLRRTL VVYNAFQVAL SGYMFYEHLM 120
  121 AGWLNYYNLK CQPVDYSDSP SSKRMLNLCY LYYLSKLTEF ADTMFFVLRK KSSQITWLHV 180
  181 YHHSVTPLET WVLVKFLAGG NATFPNLLNN FVHVCMYFYY MMAAMGPEYA KFLWWKKYMT 240
  241 ELQIAQFVLC IFHTLRALFS NQCQFSKFIS ALLLLNASIF FCLFMNFYMQ SYRKTKAAQQ 300
  301 LQQQQQQQKQ QQQLDATPCK ADSNNNTAML AQKLKAN

Type	Start	End	Confidence
Non-Cytoplasmic	1	66	0.82
Transmembrane Helix	67	88	0.91
Cytoplasmic	89	99	0.74
Transmembrane Helix	100	119	0.75
Non-Cytoplasmic	120	201	0.73
Transmembrane Helix	202	223	0.67
Cytoplasmic	224	241	0.60
Transmembrane Helix	242	260	0.83
Non-Cytoplasmic	261	267	0.81
Transmembrane Helix	268	288	0.95
Cytoplasmic	289	337	0.93