YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bond-PA, bond-PB...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNYIKIVEE RISGLSKGVD ETVDSWFLMS SPMPVVAVVL VYLAFVLKIG PEYMKNRKPM  60
   61 DLKRIMVFYN AFQVLYSIWM CRTSIQESNV MASIFSKKCE INRTREQNLT LYSGAWFYFF 120
  121 SKIIDLLDTT FFVLRKKDNQ VSFLHVYHHT ITVLFSWGYL KYAPGEQGVI IGILNSGVHI 180
  181 IMYFYYMVAA MGPQYQKYLW WKKYMTSIQL IQFVLILGYM LTVGAKGCNM PKTLTFFFVG 240
  241 NTVIFLYLFG NFYRKTYKKA KSVDGGSRTT GSSLAQSALR AAGGMGCMPQ TMNAGKHLLQ 300
  301 NGQVGKAYID LNNNSVKPMK LE

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.93
Transmembrane Helix	26	47	0.86
Cytoplasmic	48	65	0.84
Transmembrane Helix	66	86	0.69
Non-Cytoplasmic	87	114	0.74
Transmembrane Helix	115	134	0.60
Cytoplasmic	135	142	0.74
Transmembrane Helix	143	160	0.80
Non-Cytoplasmic	161	167	0.77
Transmembrane Helix	168	189	0.90
Cytoplasmic	190	204	0.85
Transmembrane Helix	205	225	0.88
Non-Cytoplasmic	226	232	0.80
Transmembrane Helix	233	253	0.92
Cytoplasmic	254	322	0.96