YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7084-PB, CG708...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.59
Transmembrane Helix	50	73	0.82
Non-Cytoplasmic	74	169	0.55
Transmembrane Helix	170	190	0.40
Cytoplasmic	191	200	0.71
Transmembrane Helix	201	218	0.84
Non-Cytoplasmic	219	223	0.74
Transmembrane Helix	224	242	0.91
Cytoplasmic	243	260	0.85
Transmembrane Helix	261	282	0.93
Non-Cytoplasmic	283	288	0.85
Transmembrane Helix	289	308	0.95
Cytoplasmic	309	373	0.96
Transmembrane Helix	374	394	0.90
Non-Cytoplasmic	395	402	0.73
Transmembrane Helix	403	423	0.75
Cytoplasmic	424	429	0.81
Transmembrane Helix	430	450	0.90
Non-Cytoplasmic	451	457	0.81
Transmembrane Helix	458	482	0.82
Cytoplasmic	483	491	0.83
Transmembrane Helix	492	514	0.90
Non-Cytoplasmic	515	521	0.80
Transmembrane Helix	522	541	0.95
Cytoplasmic	542	597	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDKKEQANS RKASQVSGHF SQMDVDDSEF NDPFQALMEK AGNHGRYQTL YNFVFVGGLA  60
   61 FSGAMIYMNI ILALNIPDHW CTVPGRENTN FSLEEWRDIT LPKQADNRGR KTFSNCEMFQ 120
  121 MNFSEITDWS AWNSNLTKTT EACQNGWSYD KTWYESTIPT DHNWVCAKDL FVTNVFVVGR 180
  181 VTEVAGSFIL GQMGDSYGRR FVYYISVVFC SLGRLGSIMC TSSYTWFLIM SGIVGLTVNS 240
  241 LFQSPQIIGM EISREEDRSR IAFFQSCGWS IGTTLMPLLY WWLRHWDSFM WLTSIPTAMV 300
  301 LLFSKYVIES PRWLISKQRF REAIVQLQKI AKINGHRFDM TEKELAEIYS RDKQDVTYGI 360
  361 ASLFAGWRLA RNTTIMGFSW CVVAVSYFTL VLFSSRMAGN PFLNFLYQSI VEIPAYVVGR 420
  421 YMGDTYGRRF TNSVSFLISF VTCLPIIVYS TDERYENLMI YLATFIKFLN ALTFFTVNLQ 480
  481 CLEIYPTCMR QTGVALGTIL ANAIGVLAPY LVYLGTTVDI RAPYYILGVL FLLGGIGALF 540
  541 LPETLHKKLP DTMEEAGHFG KHDKFFSLPK PPQAAEKDDK LSSHPELTRL RRSETAP