YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr93d-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKATKYSVGI LRFMSFYARF LSLVCFRLRK QKDNNVWLEE IWSNRSRWKW ISVTLRIVPL  60
   61 CIYAFTYAEW ISNRMLITEK FLHSCSLVVS IPCYLSIIHL KICHGPEVTK LVNQYLHIFR 120
  121 LGTLDIRRRS QFGGGRELFL LILSVCCQIH EYVFILVIAS RLCGFQHIIW WVSYTYVFII 180
  181 CNSIMCFGFI WHLSLGVLYA ELNDNLRFES GFQTAFLRKQ QRIRVQKSMA LFKEISSVVT 240
  241 SLQDIFNVHL FLSALLTLLQ VLVVWYKMII DLGFSDFRIW SFSLKNLIQT LLPVLAIQEA 300
  301 ANQFKQTRER ALDIFLVGKS KHWMKSVEIF VTHLNLSEFR VNLLGLFNVS NELFLIIVSA 360
  361 MFCYLVFVTQ CVIVYRRRYV I

Type	Start	End	Confidence
Cytoplasmic	1	49	0.66
Transmembrane Helix	50	71	0.79
Non-Cytoplasmic	72	80	0.67
Transmembrane Helix	81	100	0.65
Cytoplasmic	101	137	0.62
Transmembrane Helix	138	159	0.86
Non-Cytoplasmic	160	169	0.49
Transmembrane Helix	170	193	0.87
Cytoplasmic	194	244	0.57
Transmembrane Helix	245	269	0.83
Non-Cytoplasmic	270	352	0.73
Transmembrane Helix	353	374	0.94
Cytoplasmic	375	381	0.86