YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr93a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSSSAMTG KRAESWSRLL LLWLYRCARG LLVLSSSLDR DKLQLKATKQ GSRNRFLHIL  60
   61 WRCIVVMIYA GLWPMLTSAV IGKRLESYAD VLALAQSMSV SILAVISFVI QARGENQFRE 120
  121 VLNRYLALYQ RICLTTRLRH LFPTKFVVFF LLKLFFTLCG CFHEIIPLFE NSHFDDISQM 180
  181 VGTGFGIYMW LGTLCVLDAC FLGFLVSGIL YEHMANNIIA MLKRMEPIES QDERYRMTKY 240
  241 RRMQLLCDFA DELDECAAIY SELYHVTNSF RRILQWQILF YIYLNFINIC LMLYQYILHF 300
  301 LNDDEVVFVS IVMAFVKLAN LVLLMMCADY TVRQSEVPKK LPLDIVCSDM DERWDKSVET 360
  361 FLGQLQTQRL EIKVLGFFHL NNEFILLILS AIISYLFILI QFGITGGFEA SEDIKNRFD

Type	Start	End	Confidence
Cytoplasmic	1	58	0.79
Transmembrane Helix	59	81	0.89
Non-Cytoplasmic	82	91	0.81
Transmembrane Helix	92	110	0.97
Cytoplasmic	111	145	0.93
Transmembrane Helix	146	166	0.95
Non-Cytoplasmic	167	186	0.92
Transmembrane Helix	187	211	0.90
Cytoplasmic	212	278	0.97
Transmembrane Helix	279	298	0.97
Non-Cytoplasmic	299	305	0.89
Transmembrane Helix	306	328	0.85
Cytoplasmic	329	383	0.88
Transmembrane Helix	384	404	0.87
Non-Cytoplasmic	405	419	0.90