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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GABA-B-R2-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRPSWFPFA SLLFLLLWST ACGRTAKRSD VYIAGFFPYG DGVENSYTGR GVMPSVKLAL  60
   61 GHVNEHGKIL ANYRLHMWWN DTQCNAAVGV KSFFDMMHSG PNKVMLFGAA CTHVTDPIAK 120
  121 ASKHWHLTQL SYADTHPMFT KDAFPNFFRV VPSENAFNAP RLALLKEFNW TRVGTVYQNE 180
  181 PRYSLPHNHM VADLDAMEVE VVETQSFVND VAESLKKLRE KDVRIILGNF NEHFARKAFC 240
  241 EAYKLDMYGR AYQWLIMATY STDWWNVTQD SECSVEEIAT ALEGAILVDL LPLSTSGDIT 300
  301 VAGITADEYL VEYDRLRGTE YSRFHGYTYD GIWAAALAIQ YVAEKREDLL THFDYRVKDW 360
  361 ESVFLEALRN TSFEGVTGPV RFYNNERKAN ILINQFQLGQ MEKIGEYHSQ KSHLDLSLGK 420
  421 PVKWVGKTPP KDRTLIYIEH SQVNPTIYIV SASASVIGVI IATVFLAFNI KYRNQRYIKM 480
  481 SSPHLNNLII VGCMMTYLSI IFLGLDTTLS SVAAFPYICT ARAWILMAGF SLSFGAMFSK 540
  541 TWRVHSIFTD LKLNKKVIKD YQLFMVVGVL LAIDIAIITT WQIADPFYRE TKQLEPLHHE 600
  601 NIDDVLVIPE NEYCQSEHMT IFVSIIYAYK GLLLVFGAFL AWETRHVSIP ALNDSKHIGF 660
  661 SVYNVFITCL AGAAISLVLS DRKDLVFVLL SFFIIFCTTA TLCLVFVPKL VELKRNPQGV 720
  721 VDKRVRATLR PMSKNGRRDS SVCELEQRLR DVKNTNCRFR KALMEKENEL QALIRKLGPE 780
  781 ARKWIDGVTC TGGSNVGSEL EPILNDDIVR LSAPPVRREM PSTTVTEMTS VDSVTSTHVE 840
  841 MDNSFVSVQS TVMAPSLPPK KKKQSIVEHH SHAPAPTMMQ PIQQQLQQHL QQHQQMQQQH 900
  901 LQQQQHQQMQ QQQQQQQHHH RHLEKRNSVS AQTDDNIGSI TSTAGKRSGG DCSSMRERRQ 960
  961 STASRHYDSG SQTPTARPKY SSSHRNSSTN ISTSQSELSN MCPHSKPSTP AVIKTPTASD1020
 1021 HRRTSMGSAL KSNFVVSQSD LWDTHTLSHA KQRQSPRNYA SPQRCAEHHG GHGMTYDPNT1080
 1081 TSPIQRSVSE KNRNKHRPKP QKGTVCQSET DSERERDPPP NSQPCVQPRK VSRSSNIQHA1140
 1141 AHHHSSPNVA PDKQRSRQRG KQDSSIYGAS SETELLEGET AILPIFRKLL TEKSPNYRGR1200
 1201 SAVGQSCPNI SIKCDIVEYL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle