YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Oamb-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNETECEDLI KSVKWTEPAN LISLAVLEFI NVLVIGGNCL VIAAVFCSNK LRSVTNFFIV  60
   61 NLAVADLLVG LAVLPFSATW EVFKVWIFGD LWCRIWLAVD VWMCTASILN LCAISLDRYV 120
  121 AVTRPVTYPS IMSTKKAKSL IAGIWVLSFF ICFPPLVGWK DQKAVIQPTY PKGNHTLYYT 180
  181 TTMSSSEDGQ LGLDSIKDQG EASLPPSPPH IGNGNAYNPY DPGFAPIDGS AEIRIAAIDS 240
  241 TSTSTTATTT TTASSSSTTE TEMDLDLLNA PPQNRPQTIS GSCPWKCELT NDRGYVLYSA 300
  301 LGSFYIPMFV MLFFYWRIYR AAVRTTRAIN QGFKTTKGSP RESGNNRVDE SQLILRIHRG 360
  361 RPCSTPQRTP LSVHSMSSTL SVNSNGGGGG AVASGLGAST EDHLQGGAPK RATSMRVCRQ 420
  421 RHEKVAIKVS FPSSENVLDA GQQPQASPHY AVISSANGRR ASFKTSLFDI GETTFNLDAA 480
  481 ASGPGDLETG LSTTSLSAKK RAGKRSAKFQ VKRFRMETKA AKTLAIIVGG FIVCWLPFFT 540
  541 MYLIRAFCDH CIQPTVFSVL FWLGYCNSAI NPMIYALFSN EFRIAFKRIV CRCVCTRSGF 600
  601 RASENFQMIA ARALMAPATF HKTISGCSDD GEGVDFS

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.92
Transmembrane Helix	25	47	0.89
Cytoplasmic	48	56	0.83
Transmembrane Helix	57	78	0.93
Non-Cytoplasmic	79	95	0.87
Transmembrane Helix	96	116	0.90
Cytoplasmic	117	138	0.85
Transmembrane Helix	139	159	0.92
Non-Cytoplasmic	160	294	0.99
Transmembrane Helix	295	319	0.85
Cytoplasmic	320	522	0.99
Transmembrane Helix	523	544	0.91
Non-Cytoplasmic	545	557	0.83
Transmembrane Helix	558	578	0.91
Cytoplasmic	579	637	0.96